ENCODE
Assays and standards Glossary File formats Software tools Pipelines Data organization Release policy Schemas Help Using the portal Cart REST API Citing ENCODE FAQ Project Overview …
Search – ENCODE
Project: ENCODE Library construction method: capped RNA enrichment Experiment ENCSR841GXY released PRO-cap in peripheral blood mononuclear cell Homo sapiens peripheral blood …
Data standards – ENCODE
The ENCODE Consortium has adopted shared experimental guidelines for the most common ENCODE assays. The guidelines have evolved over time as technologies have changed, and current …
ENCORE Matrix – ENCODE
The ENCORE project aims to study protein-RNA interactions by creating a map of RNA binding proteins (RBPs) encoded in the human genome and identifying the RNA elements that the RBPs bind to.
Access to ENCODE data
All data generated by the ENCODE consortium is submitted to the DCC and available from the ENCODE portal (http://www.encodeproject.org). The data are reviewed for quality and released to …
FAQ – ENCODE
The goal of ENCODE is to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells …
ChIP-seq Data Standards and Processing Pipeline – ENCODE
Current information for Transcription Factor ChIP-seq is available here
ATAC-seq Data Standards and Processing Pipeline – ENCODE
The ENCODE ATAC-seq pipeline is used for quality control and statistical signal processing of short-read sequencing data, producing alignments and measures of enrichment.
Series search – ENCODE
Organism: Mus musculus Stages: P14, A2 Lab: Michael Snyder, Stanford Project: ENCODE Series ENCSR909AOH released
ENCODE Experiment Guidelines
ENCODE Experimental Guidelines for ENCODE3 ChIP-seq (January 2017) ENCODE Characterization Guidelines for ChIP-seq using Epitope-tagged Transcription Factors (January 2017) ENCODE …